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HUMESS: integrating quantitative transcriptomic analysis and metabolic modeling to unveil condition-specific gene signatures

Louis Paré, Philippe Bordron, Laurent David, Maxime Mahé, Audrey Bihouée, Damien Eveillard

Micro-RNA expression data from common carp brain cells infected by Cyvirus cyprinidallo3 at permissive and non-permissive temperatures

Olivier Rué, Nurul Novelia Fuandila, Saliha Hammoumi, Christine Gaspin, Jean-Christophe Avarre

CyHV-3 Expression kinetics Microtranscriptome Cell infection

Probabilistic ambiguity, outcome ambiguity or both: Does it matter for the decision-maker?

Marielle Brunette, Stéphane Couture, Kene Boun My

Risk Ambiguity Experiments Decision-making

Transcriptomic analysis of the interactions between Fibrobacter succinogenes S85, Selenomonas ruminantium PC18 and a live yeast strain used as a ruminant feed additive

Pauline Desvignes, Philippe Ruiz, Laurie Guillot, Jeanne Danon, Alexandra Durand, Martin Beaumont, Frédérique Chaucheyras-Durand, Evelyne Forano

Microbial interactions RNA-seq Saccharomyces cerevisiae Selenomonas ruminantium Fibrobacter succinogenes

Phoenics: a novel statistical approach for longitudinal metabolomic pathway analysis

Camille Guilmineau, Marie Tremblay-Franco, Nathalie Vialaneix, Rémi Servien

Longitudinal data Metabolic pathways Metabolomics Mixed model

A comprehensive review and benchmark of differential analysis tools for Hi-C data

Élise Jorge, Sylvain Foissac, Pierre Neuvial, Matthias ZYTNICKI, Nathalie Vialaneix

Hi-C statistical tests benchmark differential analysis Hi-C differential analysis statistical tests benchmark

RÁC, a Serious Agent-Based Simulation Game to Drive Discussion on Waste Management in Vietnamese Irrigation Systems

Léo Biré, Quynh Nga Phung, Patrick Taillandier, Diep Anh Phung, Ngoc Doanh Nguyen, Alexis Drogoul

Serious Game Agent-Based Simulation Waste Management Irrigation System Red River Delta Vietnam